Center for Microbial Ecology Image Analysis System (CMEIAS)


CMEIAS consists of several custom plug-ins for UTHSCSA ImageTool, a free image analysis software operating on a personal computer in a Windows NT or higher environment. The main objective of CMEIAS is to provide computing tools designed to strengthen microscopy-based approaches for understanding microbial ecology. CMEIAS software contains many measurement features, the most unique of which is an object classifier that automatically categorizes each cell in the image into one of 11 predominant microbial morphotypes, including cocci, spirals, curved rods, U-shaped rods, regular straight rods, unbranched filaments, ellipsoids, clubs, rods with extended prostheca, rudimentary branched rods, and branched filaments. This information is useful for studies on the ecology of microbial populations and communities.




MSU Center for Microbial Ecology.

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